J3_4WCE_002

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WCE_002 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0678

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4WCE|1|X|C|743
4WCE|1|X|A|744
4WCE|1|X|G|745
*
4WCE|1|X|C|777
4WCE|1|X|G|778
4WCE|1|X|A|779
4WCE|1|X|A|780
4WCE|1|X|C|781
*
4WCE|1|X|G|805
4WCE|1|X|A|806
4WCE|1|X|U|807
4WCE|1|X|G|808

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2