J3_4WCE_016

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WCE_016 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.0792

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WCE|1|X|G|1468
4WCE|1|X|G|1469
4WCE|1|X|G|1470
4WCE|1|X|A|1471
4WCE|1|X|C|1472
4WCE|1|X|G|1473
*
4WCE|1|X|C|1611
4WCE|1|X|C|1612
*
4WCE|1|X|G|1615
4WCE|1|X|A|1616
4WCE|1|X|A|1617
4WCE|1|X|A|1618
4WCE|1|X|A|1619
4WCE|1|X|G|1620
4WCE|1|X|C|1621

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2