J3_4WCE_017
3D structure
- PDB id
- 4WCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.53 Å
Loop
- Sequence
- GCUC*GACUUAGUGAUCC*GCUCAAC
- Length
- 24 nucleotides
- Bulged bases
- 4WCE|1|X|A|2415, 4WCE|1|X|U|2417, 4WCE|1|X|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WCE_017 not in the Motif Atlas
- Homologous match to J3_4WF9_019
- Geometric discrepancy: 0.0988
- The information below is about J3_4WF9_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4WCE|1|X|G|2309
4WCE|1|X|C|2310
4WCE|1|X|U|2311
4WCE|1|X|C|2312
*
4WCE|1|X|G|2410
4WCE|1|X|A|2411
4WCE|1|X|C|2412
4WCE|1|X|U|2413
4WCE|1|X|U|2414
4WCE|1|X|A|2415
4WCE|1|X|G|2416
4WCE|1|X|U|2417
4WCE|1|X|G|2418
4WCE|1|X|A|2419
4WCE|1|X|U|2420
4WCE|1|X|C|2421
4WCE|1|X|C|2422
*
4WCE|1|X|G|2448
4WCE|1|X|C|2449
4WCE|1|X|U|2450
4WCE|1|X|C|2451
4WCE|1|X|A|2452
4WCE|1|X|A|2453
4WCE|1|X|C|2454
Current chains
- Chain X
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
Coloring options: