J3_4WF1_029

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GUGAUCUA*UGG*CAAAC

Length

16 nucleotides

Bulged bases

4WF1|1|DA|U|686, 4WF1|1|DA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|DA|G|682
4WF1|1|DA|U|683
4WF1|1|DA|G|684
4WF1|1|DA|A|685
4WF1|1|DA|U|686
4WF1|1|DA|C|687
4WF1|1|DA|U|688
4WF1|1|DA|A|689
*
4WF1|1|DA|U|773
4WF1|1|DA|G|774
4WF1|1|DA|G|775
*
4WF1|1|DA|C|791
4WF1|1|DA|A|792
4WF1|1|DA|A|793
4WF1|1|DA|A|794
4WF1|1|DA|C|795

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2

Chain DE

50S ribosomal protein L4