J3_4WF1_037

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GGAAC*GUUGAU*AAUGAACC

Length

19 nucleotides

Bulged bases

4WF1|1|DA|U|2833, 4WF1|1|DA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|DA|G|2811
4WF1|1|DA|G|2812
4WF1|1|DA|A|2813
4WF1|1|DA|A|2814
4WF1|1|DA|C|2815
*
4WF1|1|DA|G|2831
4WF1|1|DA|U|2832
4WF1|1|DA|U|2833
4WF1|1|DA|G|2834
4WF1|1|DA|A|2835
4WF1|1|DA|U|2836
*
4WF1|1|DA|A|2882
4WF1|1|DA|A|2883
4WF1|1|DA|U|2884
4WF1|1|DA|G|2885
4WF1|1|DA|A|2886
4WF1|1|DA|A|2887
4WF1|1|DA|C|2888
4WF1|1|DA|C|2889

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DN

50S ribosomal protein L17

Chain DS

50S ribosomal protein L22