J3_4WF1_041

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

4WF1|1|AA|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WF1_041 not in the Motif Atlas

Geometric match to J3_5J7L_002

Geometric discrepancy: 0.0687

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4WF1|1|AA|C|586
4WF1|1|AA|G|587
4WF1|1|AA|G|588
*
4WF1|1|AA|C|651
4WF1|1|AA|U|652
4WF1|1|AA|U|653
4WF1|1|AA|G|654
*
4WF1|1|AA|C|754
4WF1|1|AA|G|755

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AL

30S ribosomal protein S12

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17