J3_4WF1_046

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4WF1|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WF1_046 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2267

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4WF1|1|AA|C|990
4WF1|1|AA|U|991
4WF1|1|AA|U|992
4WF1|1|AA|G|993
4WF1|1|AA|A|994
4WF1|1|AA|C|995
4WF1|1|AA|A|996
4WF1|1|AA|U|997
*
4WF1|1|AA|A|1044
4WF1|1|AA|C|1045
4WF1|1|AA|A|1046
4WF1|1|AA|G|1047
*
4WF1|1|AA|C|1210
4WF1|1|AA|U|1211
4WF1|1|AA|U|1212
4WF1|1|AA|A|1213
4WF1|1|AA|C|1214
4WF1|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14