J3_4WF1_073

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUACC*GGGAAAG

Length

29 nucleotides

Bulged bases

4WF1|1|DA|U|34, 4WF1|1|DA|U|448, 4WF1|1|DA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|DA|C|32
4WF1|1|DA|C|33
4WF1|1|DA|U|34
4WF1|1|DA|G|35
*
4WF1|1|DA|C|445
4WF1|1|DA|G|446
4WF1|1|DA|A|447
4WF1|1|DA|U|448
4WF1|1|DA|A|449
4WF1|1|DA|G|450
4WF1|1|DA|U|451
4WF1|1|DA|G|452
4WF1|1|DA|A|453
4WF1|1|DA|A|454
4WF1|1|DA|C|455
4WF1|1|DA|C|456
4WF1|1|DA|A|457
4WF1|1|DA|G|458
4WF1|1|DA|U|459
4WF1|1|DA|A|460
4WF1|1|DA|C|461
4WF1|1|DA|C|462
*
4WF1|1|DA|G|467
4WF1|1|DA|G|468
4WF1|1|DA|G|469
4WF1|1|DA|A|470
4WF1|1|DA|A|471
4WF1|1|DA|A|472
4WF1|1|DA|G|473

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DE

50S ribosomal protein L4

Chain DQ

50S ribosomal protein L20

Chain DT

50S ribosomal protein L23