J3_4WF1_078

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CUG*CUAACG*CGGACAG

Length

16 nucleotides

Bulged bases

4WF1|1|DA|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WF1_078 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1767

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4WF1|1|DA|C|2091
4WF1|1|DA|U|2092
4WF1|1|DA|G|2093
*
4WF1|1|DA|C|2196
4WF1|1|DA|U|2197
4WF1|1|DA|A|2198
4WF1|1|DA|A|2199
4WF1|1|DA|C|2200
4WF1|1|DA|G|2201
*
4WF1|1|DA|C|2222
4WF1|1|DA|G|2223
4WF1|1|DA|G|2224
4WF1|1|DA|A|2225
4WF1|1|DA|C|2226
4WF1|1|DA|A|2227
4WF1|1|DA|G|2228

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2

Chain DH

50S ribosomal protein L9

Chain DX

50S ribosomal protein L28