J3_4WF9_006

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CUGC*GCGGCCCCUAAGGUAG*CGAAAG

Length

26 nucleotides

Bulged bases

4WF9|1|X|C|1936, 4WF9|1|X|A|1998

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60034.1

Basepair signature

cWW-F-F-F-cHW-F-cWW-tSS-F-cSS-F-F-tWH-F-tHS-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4WF9|1|X|C|1860
4WF9|1|X|U|1861
4WF9|1|X|G|1862
4WF9|1|X|C|1863
*
4WF9|1|X|G|1931
4WF9|1|X|C|1932
4WF9|1|X|G|1933
4WF9|1|X|G|1934
4WF9|1|X|C|1935
4WF9|1|X|C|1936
4WF9|1|X|C|1951
4WF9|1|X|C|1952
4WF9|1|X|U|1953
4WF9|1|X|A|1954
4WF9|1|X|A|1955
4WF9|1|X|G|1956
4WF9|1|X|G|1957
4WF9|1|X|U|1958
4WF9|1|X|A|1959
4WF9|1|X|G|1960
*
4WF9|1|X|C|1994
4WF9|1|X|G|1995
4WF9|1|X|A|1996
4WF9|1|X|A|1997
4WF9|1|X|A|1998
4WF9|1|X|G|1999

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2