J3_4WF9_008

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CUC*GAG*CAUAAG

Length

12 nucleotides

Bulged bases

4WF9|1|X|U|2361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4WF9|1|X|C|2322
4WF9|1|X|U|2323
4WF9|1|X|C|2324
*
4WF9|1|X|G|2348
4WF9|1|X|A|2349
4WF9|1|X|G|2350
*
4WF9|1|X|C|2359
4WF9|1|X|A|2360
4WF9|1|X|U|2361
4WF9|1|X|A|2362
4WF9|1|X|A|2363
4WF9|1|X|G|2364

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain T

50S ribosomal protein L27

Chain Y

5S ribosomal RNA; 5S rRNA