J3_4WF9_012

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CUUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4WF9|1|X|U|494, 4WF9|1|X|C|502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4WF9|1|X|C|32
4WF9|1|X|U|33
4WF9|1|X|U|34
4WF9|1|X|G|35
*
4WF9|1|X|C|491
4WF9|1|X|G|492
4WF9|1|X|A|493
4WF9|1|X|U|494
4WF9|1|X|A|495
4WF9|1|X|G|496
4WF9|1|X|U|497
4WF9|1|X|G|498
4WF9|1|X|A|499
4WF9|1|X|A|500
4WF9|1|X|C|501
4WF9|1|X|C|502
4WF9|1|X|A|503
4WF9|1|X|G|504
4WF9|1|X|U|505
4WF9|1|X|A|506
4WF9|1|X|C|507
*
4WF9|1|X|G|514
4WF9|1|X|G|515
4WF9|1|X|A|516
4WF9|1|X|A|517
4WF9|1|X|A|518
4WF9|1|X|G|519

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L4

Chain N

50S ribosomal protein L20

Chain Q

50S ribosomal protein L23