J3_4WFA_004

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFA_004 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0801

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4WFA|1|X|C|743
4WFA|1|X|A|744
4WFA|1|X|G|745
*
4WFA|1|X|C|777
4WFA|1|X|G|778
4WFA|1|X|A|779
4WFA|1|X|A|780
4WFA|1|X|C|781
*
4WFA|1|X|G|805
4WFA|1|X|A|806
4WFA|1|X|U|807
4WFA|1|X|G|808

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2