J3_4WFA_005

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFA_005 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.0669

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4WFA|1|X|C|1335
4WFA|1|X|G|1336
4WFA|1|X|A|1337
4WFA|1|X|U|1338
4WFA|1|X|U|1339
4WFA|1|X|G|1340
*
4WFA|1|X|C|1669
4WFA|1|X|A|1670
4WFA|1|X|A|1671
*
4WFA|1|X|U|1683
4WFA|1|X|A|1684
4WFA|1|X|A|1685
4WFA|1|X|G|1686

Current chains

Chain X

23S rRNA

Nearby chains