J3_4WFA_008

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFA_008 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1144

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4WFA|1|X|U|2118
4WFA|1|X|U|2119
4WFA|1|X|G|2120
*
4WFA|1|X|C|2223
4WFA|1|X|U|2224
4WFA|1|X|A|2225
4WFA|1|X|A|2226
4WFA|1|X|C|2227
4WFA|1|X|C|2228
*
4WFA|1|X|G|2249
4WFA|1|X|A|2250
4WFA|1|X|G|2251
4WFA|1|X|A|2252
4WFA|1|X|C|2253
4WFA|1|X|A|2254
4WFA|1|X|G|2255

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28