J3_4WFA_016

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GCU*ACUUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

4WFA|1|X|U|2417, 4WFA|1|X|A|2453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFA_016 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.1359

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4WFA|1|X|G|2309
4WFA|1|X|C|2310
4WFA|1|X|U|2311
*
4WFA|1|X|A|2411
4WFA|1|X|C|2412
4WFA|1|X|U|2413
4WFA|1|X|U|2414
4WFA|1|X|A|2415
4WFA|1|X|G|2416
4WFA|1|X|U|2417
4WFA|1|X|G|2418
4WFA|1|X|A|2419
4WFA|1|X|U|2420
4WFA|1|X|C|2421
4WFA|1|X|C|2422
*
4WFA|1|X|G|2448
4WFA|1|X|C|2449
4WFA|1|X|U|2450
4WFA|1|X|C|2451
4WFA|1|X|A|2452
4WFA|1|X|A|2453
4WFA|1|X|C|2454

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15

Chain T

50S ribosomal protein L27