J3_4WFB_010

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFB_010 not in the Motif Atlas

Geometric match to J3_4WF9_010

Geometric discrepancy: 0.0481

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

4WFB|1|X|G|30
4WFB|1|X|C|31
*
4WFB|1|X|G|520
4WFB|1|X|U|521
4WFB|1|X|G|522
4WFB|1|X|A|523
4WFB|1|X|A|524
4WFB|1|X|A|525
4WFB|1|X|A|526
4WFB|1|X|G|527
*
4WFB|1|X|C|554
4WFB|1|X|C|555

Current chains

Chain X

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain R

50S ribosomal protein L24