J3_4WFB_016

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GCU*ACUUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

4WFB|1|X|U|2417, 4WFB|1|X|A|2453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WFB_016 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.1371

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4WFB|1|X|G|2309
4WFB|1|X|C|2310
4WFB|1|X|U|2311
*
4WFB|1|X|A|2411
4WFB|1|X|C|2412
4WFB|1|X|U|2413
4WFB|1|X|U|2414
4WFB|1|X|A|2415
4WFB|1|X|G|2416
4WFB|1|X|U|2417
4WFB|1|X|G|2418
4WFB|1|X|A|2419
4WFB|1|X|U|2420
4WFB|1|X|C|2421
4WFB|1|X|C|2422
*
4WFB|1|X|G|2448
4WFB|1|X|C|2449
4WFB|1|X|U|2450
4WFB|1|X|C|2451
4WFB|1|X|A|2452
4WFB|1|X|A|2453
4WFB|1|X|C|2454

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15

Chain T

50S ribosomal protein L27