J3_4WOI_021

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_021 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0745

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4WOI|1|CA|C|698
4WOI|1|CA|A|699
4WOI|1|CA|G|700
*
4WOI|1|CA|C|732
4WOI|1|CA|G|733
4WOI|1|CA|A|734
4WOI|1|CA|A|735
4WOI|1|CA|C|736
*
4WOI|1|CA|G|760
4WOI|1|CA|A|761
4WOI|1|CA|U|762
4WOI|1|CA|G|763

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2