3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
4WOI|1|CA|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4WOI|1|CA|C|2295
4WOI|1|CA|U|2296
4WOI|1|CA|A|2297
4WOI|1|CA|A|2298
4WOI|1|CA|U|2299
*
4WOI|1|CA|A|2317
4WOI|1|CA|G|2318
4WOI|1|CA|G|2319
4WOI|1|CA|U|2320
4WOI|1|CA|U|2321
4WOI|1|CA|A|2322
4WOI|1|CA|G|2323
*
4WOI|1|CA|C|2332
4WOI|1|CA|A|2333
4WOI|1|CA|U|2334
4WOI|1|CA|A|2335
4WOI|1|CA|A|2336
4WOI|1|CA|G|2337

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain CB
5S ribosomal RNA; 5S rRNA
Chain CF
50S ribosomal protein L5
Chain CO
50S ribosomal protein L18
Chain CW
50S ribosomal protein L27
Chain DW
Transfer RNA; tRNA

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.6126 s
Application loaded.