J3_4WOI_028

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4WOI|1|CA|A|2518, 4WOI|1|CA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_028 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0701

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4WOI|1|CA|C|2517
4WOI|1|CA|A|2518
4WOI|1|CA|U|2519
4WOI|1|CA|C|2520
*
4WOI|1|CA|G|2545
4WOI|1|CA|U|2546
4WOI|1|CA|A|2547
*
4WOI|1|CA|U|2561
4WOI|1|CA|U|2562
4WOI|1|CA|U|2563
4WOI|1|CA|A|2564
4WOI|1|CA|A|2565
4WOI|1|CA|A|2566
4WOI|1|CA|G|2567

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CK

50S ribosomal protein L14