J3_4WOI_030
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 4WOI|1|CB|U|3014, 4WOI|1|CB|A|3108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WOI_030 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.1351
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4WOI|1|CB|G|3010
4WOI|1|CB|C|3011
4WOI|1|CB|C|3012
4WOI|1|CB|G|3013
4WOI|1|CB|U|3014
4WOI|1|CB|A|3015
4WOI|1|CB|G|3016
*
4WOI|1|CB|C|3068
4WOI|1|CB|G|3069
4WOI|1|CB|C|3070
*
4WOI|1|CB|G|3106
4WOI|1|CB|G|3107
4WOI|1|CB|A|3108
4WOI|1|CB|A|3109
4WOI|1|CB|C|3110
Current chains
- Chain CB
- 5S ribosomal RNA
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CO
- 50S ribosomal protein L18
- Chain CV
- 50S ribosomal protein L25
- Chain CW
- 50S ribosomal protein L27
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