J3_4WOI_057

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

4WOI|1|CA|U|72, 4WOI|1|CA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_057 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0765

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4WOI|1|CA|A|56
4WOI|1|CA|C|57
*
4WOI|1|CA|G|70
4WOI|1|CA|A|71
4WOI|1|CA|U|72
4WOI|1|CA|A|73
4WOI|1|CA|A|74
4WOI|1|CA|G|75
4WOI|1|CA|C|76
*
4WOI|1|CA|G|110
4WOI|1|CA|A|111
4WOI|1|CA|U|112
4WOI|1|CA|U|113
4WOI|1|CA|U|114

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L34

Chain CT

50S ribosomal protein L23

Chain CY

50S ribosomal protein L29