J3_4WOI_058

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

4WOI|1|CA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WOI_058 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0541

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4WOI|1|CA|G|297
4WOI|1|CA|G|298
4WOI|1|CA|A|299
4WOI|1|CA|A|300
4WOI|1|CA|G|301
*
4WOI|1|CA|C|316
4WOI|1|CA|G|317
4WOI|1|CA|C|318
4WOI|1|CA|G|319
4WOI|1|CA|A|320
4WOI|1|CA|U|321
4WOI|1|CA|A|322
4WOI|1|CA|C|323
4WOI|1|CA|A|324
4WOI|1|CA|G|325
*
4WOI|1|CA|C|337
4WOI|1|CA|G|338
4WOI|1|CA|U|339
4WOI|1|CA|A|340
4WOI|1|CA|C|341

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CU

50S ribosomal protein L24