J3_4WOI_073

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCAGACAGCCAGGA*UUUAAAGAAA*UCACUGGUCGAG

Length

37 nucleotides

Bulged bases

4WOI|1|CA|C|1045, 4WOI|1|CA|A|1046, 4WOI|1|CA|A|1084, 4WOI|1|CA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|CA|C|1043
4WOI|1|CA|C|1044
4WOI|1|CA|C|1045
4WOI|1|CA|A|1046
4WOI|1|CA|G|1047
4WOI|1|CA|A|1048
4WOI|1|CA|C|1049
4WOI|1|CA|A|1050
4WOI|1|CA|G|1051
4WOI|1|CA|C|1052
4WOI|1|CA|C|1053
4WOI|1|CA|A|1054
4WOI|1|CA|G|1055
4WOI|1|CA|G|1056
4WOI|1|CA|A|1057
*
4WOI|1|CA|U|1081
4WOI|1|CA|U|1082
4WOI|1|CA|U|1083
4WOI|1|CA|A|1084
4WOI|1|CA|A|1085
4WOI|1|CA|A|1086
4WOI|1|CA|G|1087
4WOI|1|CA|A|1088
4WOI|1|CA|A|1089
4WOI|1|CA|A|1090
*
4WOI|1|CA|U|1101
4WOI|1|CA|C|1102
4WOI|1|CA|A|1103
4WOI|1|CA|C|1104
4WOI|1|CA|U|1105
4WOI|1|CA|G|1106
4WOI|1|CA|G|1107
4WOI|1|CA|U|1108
4WOI|1|CA|C|1109
4WOI|1|CA|G|1110
4WOI|1|CA|A|1111
4WOI|1|CA|G|1112

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6

Chain CI

50S ribosomal protein L11