J3_4WPO_044
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4WPO|1|AA|A|2400, 4WPO|1|AA|U|2402, 4WPO|1|AA|A|2438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WPO_044 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0561
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4WPO|1|AA|G|2294
4WPO|1|AA|C|2295
4WPO|1|AA|C|2296
*
4WPO|1|AA|G|2396
4WPO|1|AA|C|2397
4WPO|1|AA|C|2398
4WPO|1|AA|U|2399
4WPO|1|AA|A|2400
4WPO|1|AA|G|2401
4WPO|1|AA|U|2402
4WPO|1|AA|G|2403
4WPO|1|AA|A|2404
4WPO|1|AA|A|2405
4WPO|1|AA|C|2406
4WPO|1|AA|C|2407
*
4WPO|1|AA|G|2433
4WPO|1|AA|A|2434
4WPO|1|AA|U|2435
4WPO|1|AA|C|2436
4WPO|1|AA|A|2437
4WPO|1|AA|A|2438
4WPO|1|AA|C|2439
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A0
- 50S ribosomal protein L27
- Chain A1
- 50S ribosomal protein L28
- Chain A6
- 50S ribosomal protein L33
- Chain A8
- 50S ribosomal protein L35
- Chain AP
- 50S ribosomal protein L15
- Chain BY
- Transfer RNA; tRNA
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