J3_4WQ1_010

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQ1_010 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0547

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4WQ1|1|14|C|698
4WQ1|1|14|A|699
4WQ1|1|14|G|700
*
4WQ1|1|14|C|732
4WQ1|1|14|G|733
4WQ1|1|14|A|734
4WQ1|1|14|A|735
4WQ1|1|14|C|736
*
4WQ1|1|14|G|760
4WQ1|1|14|A|761
4WQ1|1|14|U|762
4WQ1|1|14|G|763

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2