J3_4WQ1_027

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4WQ1|1|1H|G|686, 4WQ1|1|1H|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQ1_027 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.087

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQ1|1|1H|C|683
4WQ1|1|1H|G|684
4WQ1|1|1H|A|685
4WQ1|1|1H|G|686
4WQ1|1|1H|C|687
4WQ1|1|1H|U|688
4WQ1|1|1H|A|689
*
4WQ1|1|1H|U|773
4WQ1|1|1H|A|774
4WQ1|1|1H|G|775
*
4WQ1|1|1H|C|791
4WQ1|1|1H|G|792
4WQ1|1|1H|A|793
4WQ1|1|1H|G|794

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain P8

50S ribosomal protein L34