J3_4WQ1_046

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4WQ1|1|14|U|72, 4WQ1|1|14|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQ1_046 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.1335

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQ1|1|14|A|56
4WQ1|1|14|C|57
*
4WQ1|1|14|G|70
4WQ1|1|14|A|71
4WQ1|1|14|U|72
4WQ1|1|14|A|73
4WQ1|1|14|A|74
4WQ1|1|14|G|75
4WQ1|1|14|C|76
*
4WQ1|1|14|G|110
4WQ1|1|14|A|111
4WQ1|1|14|U|112
4WQ1|1|14|G|113
4WQ1|1|14|U|114

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain G5

50S ribosomal protein L29

Chain L5

50S ribosomal protein L34