J3_4WQF_002

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQF_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0363

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4WQF|1|AA|C|745
4WQF|1|AA|A|746
4WQF|1|AA|G|747
*
4WQF|1|AA|C|779
4WQF|1|AA|G|780
4WQF|1|AA|A|781
4WQF|1|AA|A|782
4WQF|1|AA|C|783
*
4WQF|1|AA|G|807
4WQF|1|AA|A|808
4WQF|1|AA|U|809
4WQF|1|AA|G|810

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2