J3_4WQU_002

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0488

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4WQU|1|AA|C|745
4WQU|1|AA|A|746
4WQU|1|AA|G|747
*
4WQU|1|AA|C|779
4WQU|1|AA|G|780
4WQU|1|AA|A|781
4WQU|1|AA|A|782
4WQU|1|AA|C|783
*
4WQU|1|AA|G|807
4WQU|1|AA|A|808
4WQU|1|AA|U|809
4WQU|1|AA|G|810

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2