J3_4WQU_029

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_029 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1032

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4WQU|1|DA|C|936
4WQU|1|DA|A|937
4WQU|1|DA|A|938
4WQU|1|DA|G|939
*
4WQU|1|DA|C|1344
4WQU|1|DA|U|1345
4WQU|1|DA|A|1346
4WQU|1|DA|G|1347
4WQU|1|DA|U|1348
4WQU|1|DA|A|1349
4WQU|1|DA|A|1350
*
4WQU|1|DA|U|1372
4WQU|1|DA|G|1373
4WQU|1|DA|A|1374
4WQU|1|DA|A|1375
4WQU|1|DA|U|1376
4WQU|1|DA|A|1377
4WQU|1|DA|C|1378
4WQU|1|DA|G|1379

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DG

30S ribosomal protein S7

Chain DI

30S ribosomal protein S9

Chain DY

Transfer RNA; tRNA