J3_4WQU_040

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4WQU|1|AA|U|71, 4WQU|1|AA|A|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_040 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.0543

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|A|55
4WQU|1|AA|C|56
*
4WQU|1|AA|G|69
4WQU|1|AA|A|70
4WQU|1|AA|U|71
4WQU|1|AA|A|72
4WQU|1|AA|A|73
4WQU|1|AA|G|74
4WQU|1|AA|C|75
*
4WQU|1|AA|G|108
4WQU|1|AA|A|109
4WQU|1|AA|U|110
4WQU|1|AA|G|111
4WQU|1|AA|U|112

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L29

Chain A7

50S ribosomal protein L34

Chain AX

50S ribosomal protein L23