J3_4WQU_046

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

4WQU|1|AA|A|2400, 4WQU|1|AA|U|2402, 4WQU|1|AA|A|2438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WQU_046 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.0538

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4WQU|1|AA|G|2294
4WQU|1|AA|C|2295
4WQU|1|AA|C|2296
*
4WQU|1|AA|G|2396
4WQU|1|AA|C|2397
4WQU|1|AA|C|2398
4WQU|1|AA|U|2399
4WQU|1|AA|A|2400
4WQU|1|AA|G|2401
4WQU|1|AA|U|2402
4WQU|1|AA|G|2403
4WQU|1|AA|A|2404
4WQU|1|AA|A|2405
4WQU|1|AA|C|2406
4WQU|1|AA|C|2407
*
4WQU|1|AA|G|2433
4WQU|1|AA|A|2434
4WQU|1|AA|U|2435
4WQU|1|AA|C|2436
4WQU|1|AA|A|2437
4WQU|1|AA|A|2438
4WQU|1|AA|C|2439

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain A1

50S ribosomal protein L28

Chain A6

50S ribosomal protein L33

Chain A8

50S ribosomal protein L35

Chain AP

50S ribosomal protein L15

Chain BY

Transfer RNA; tRNA