J3_4WQU_064

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCGAAGACAGCCAGGAGG*CCUUUAAAGAGUG*CUCACUGGUCGAGUG

Length

47 nucleotides

Bulged bases

4WQU|1|CA|A|1046, 4WQU|1|CA|G|1047, 4WQU|1|CA|G|1110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQU|1|CA|C|1041
4WQU|1|CA|G|1042
4WQU|1|CA|C|1043
4WQU|1|CA|G|1044
4WQU|1|CA|A|1045
4WQU|1|CA|A|1046
4WQU|1|CA|G|1047
4WQU|1|CA|A|1048
4WQU|1|CA|C|1049
4WQU|1|CA|A|1050
4WQU|1|CA|G|1051
4WQU|1|CA|C|1052
4WQU|1|CA|C|1053
4WQU|1|CA|A|1054
4WQU|1|CA|G|1055
4WQU|1|CA|G|1056
4WQU|1|CA|A|1057
4WQU|1|CA|G|1058
4WQU|1|CA|G|1059
*
4WQU|1|CA|C|1079
4WQU|1|CA|C|1080
4WQU|1|CA|U|1081
4WQU|1|CA|U|1082
4WQU|1|CA|U|1083
4WQU|1|CA|A|1084
4WQU|1|CA|A|1085
4WQU|1|CA|A|1086
4WQU|1|CA|G|1087
4WQU|1|CA|A|1088
4WQU|1|CA|G|1089
4WQU|1|CA|U|1090
4WQU|1|CA|G|1091
*
4WQU|1|CA|C|1100
4WQU|1|CA|U|1101
4WQU|1|CA|C|1102
4WQU|1|CA|A|1103
4WQU|1|CA|C|1104
4WQU|1|CA|U|1105
4WQU|1|CA|G|1106
4WQU|1|CA|G|1107
4WQU|1|CA|U|1108
4WQU|1|CA|C|1109
4WQU|1|CA|G|1110
4WQU|1|CA|A|1111
4WQU|1|CA|G|1112
4WQU|1|CA|U|1113
4WQU|1|CA|G|1114

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C9

50S ribosomal protein L36

Chain CH

50S ribosomal protein L6

Chain CK

50S ribosomal protein L10

Chain CL

50S ribosomal protein L11

Chain CQ

50S ribosomal protein L16

Chain CZ

50S ribosomal protein L25