J3_4WQU_083

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAUG*CCCAGUUCGGAUU*AUGAAGCCG

Length

27 nucleotides

Bulged bases

4WQU|1|DA|U|1240, 4WQU|1|DA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQU|1|DA|C|1237
4WQU|1|DA|A|1238
4WQU|1|DA|A|1239
4WQU|1|DA|U|1240
4WQU|1|DA|G|1241
*
4WQU|1|DA|C|1296
4WQU|1|DA|C|1297
4WQU|1|DA|C|1298
4WQU|1|DA|A|1299
4WQU|1|DA|G|1300
4WQU|1|DA|U|1301
4WQU|1|DA|U|1302
4WQU|1|DA|C|1303
4WQU|1|DA|G|1304
4WQU|1|DA|G|1305
4WQU|1|DA|A|1306
4WQU|1|DA|U|1307
4WQU|1|DA|U|1308
*
4WQU|1|DA|A|1329
4WQU|1|DA|U|1330
4WQU|1|DA|G|1331
4WQU|1|DA|A|1332
4WQU|1|DA|A|1333
4WQU|1|DA|G|1334
4WQU|1|DA|C|1335
4WQU|1|DA|C|1336
4WQU|1|DA|G|1337

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DG

30S ribosomal protein S7

Chain DM

30S ribosomal protein S13

Chain DU

30S ribosomal protein Thx

Chain DY

Transfer RNA; tRNA