J3_4WRA_020
3D structure
- PDB id
- 4WRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4WRA|1|1G|A|975, 4WRA|1|1G|G|976, 4WRA|1|1G|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WRA_020 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1436
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4WRA|1|1G|U|955
4WRA|1|1G|U|956
4WRA|1|1G|U|957
4WRA|1|1G|A|958
4WRA|1|1G|A|959
4WRA|1|1G|U|960
4WRA|1|1G|U|961
4WRA|1|1G|C|962
*
4WRA|1|1G|G|973
4WRA|1|1G|A|974
4WRA|1|1G|A|975
4WRA|1|1G|G|976
4WRA|1|1G|A|977
4WRA|1|1G|A|978
4WRA|1|1G|C|979
4WRA|1|1G|C|980
4WRA|1|1G|U|981
4WRA|1|1G|U|982
4WRA|1|1G|A|983
4WRA|1|1G|C|984
*
4WRA|1|1G|G|1221
4WRA|1|1G|G|1222
4WRA|1|1G|C|1223
4WRA|1|1G|G|1224
4WRA|1|1G|A|1225
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain AA
- 30S ribosomal protein S19
Coloring options: