J3_4WRA_026

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4WRA|1|1H|G|686, 4WRA|1|1H|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WRA_026 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0883

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

4WRA|1|1H|C|683
4WRA|1|1H|G|684
4WRA|1|1H|A|685
4WRA|1|1H|G|686
4WRA|1|1H|C|687
4WRA|1|1H|U|688
4WRA|1|1H|A|689
*
4WRA|1|1H|U|773
4WRA|1|1H|A|774
4WRA|1|1H|G|775
*
4WRA|1|1H|C|791
4WRA|1|1H|G|792
4WRA|1|1H|A|793
4WRA|1|1H|G|794

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain P8

50S ribosomal protein L34