Loop J3_4WRO

3D structure

PDB id: 4WRO (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å

Loop

Sequence: A(4SU)AGCUCAG(H2U)CGG(H2U)AGAGCAG*CGU(7MG)UCCU*AGU
Length: 32 nucleotides
Bulged bases: 4WRO|1|3K|H2U|16||||P_1, 4WRO|1|3K|C|17||||P_1, 4WRO|1|3K|G|18||||P_1, 4WRO|1|3K|G|19||||P_1, 4WRO|1|3K|H2U|20||||P_1, 4WRO|1|3K|U|45||||P_1, 4WRO|1|3K|U|47||||P_1
QA status: Modified nucleotides: 4SU, H2U, 7MG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4WRO|1|3K|A|7||||P_1
4WRO|1|3K|4SU|8||||P_1
4WRO|1|3K|A|9||||P_1
4WRO|1|3K|G|10||||P_1
4WRO|1|3K|C|11||||P_1
4WRO|1|3K|U|12||||P_1
4WRO|1|3K|C|13||||P_1
4WRO|1|3K|A|14||||P_1
4WRO|1|3K|G|15||||P_1
4WRO|1|3K|H2U|16||||P_1
4WRO|1|3K|C|17||||P_1
4WRO|1|3K|G|18||||P_1
4WRO|1|3K|G|19||||P_1
4WRO|1|3K|H2U|20||||P_1
4WRO|1|3K|A|21||||P_1
4WRO|1|3K|G|22||||P_1
4WRO|1|3K|A|23||||P_1
4WRO|1|3K|G|24||||P_1
4WRO|1|3K|C|25||||P_1
4WRO|1|3K|A|26||||P_1
4WRO|1|3K|G|27||||P_1
*
4WRO|1|3K|C|43||||P_1
4WRO|1|3K|G|44||||P_1
4WRO|1|3K|U|45||||P_1
4WRO|1|3K|7MG|46||||P_1
4WRO|1|3K|U|47||||P_1
4WRO|1|3K|C|48||||P_1
4WRO|1|3K|C|49||||P_1
4WRO|1|3K|U|50||||P_1
*
4WRO|1|3K|A|64||||P_1
4WRO|1|3K|G|65||||P_1
4WRO|1|3K|U|66||||P_1

Current chains

Chain 3K: tRNA-Phe

Nearby chains

Chain 1H: Large subunit ribosomal RNA; LSU rRNA
Chain 2I: 30S ribosomal protein S11
Chain 6E: 30S ribosomal protein S7
Chain O8: 50S ribosomal protein L33

J3_4WRO_071