J3_4WRO_074
3D structure
- PDB id
- 4WRO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4WRO|1|1G|A|975||||P_1, 4WRO|1|1G|G|976||||P_1, 4WRO|1|1G|A|978||||P_1, 4WRO|1|1G|C|979||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WRO_074 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.197
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4WRO|1|1G|U|955||||P_1
4WRO|1|1G|U|956||||P_1
4WRO|1|1G|U|957||||P_1
4WRO|1|1G|A|958||||P_1
4WRO|1|1G|A|959||||P_1
4WRO|1|1G|U|960||||P_1
4WRO|1|1G|U|961||||P_1
4WRO|1|1G|C|962||||P_1
*
4WRO|1|1G|G|973||||P_1
4WRO|1|1G|A|974||||P_1
4WRO|1|1G|A|975||||P_1
4WRO|1|1G|G|976||||P_1
4WRO|1|1G|A|977||||P_1
4WRO|1|1G|A|978||||P_1
4WRO|1|1G|C|979||||P_1
4WRO|1|1G|C|980||||P_1
4WRO|1|1G|U|981||||P_1
4WRO|1|1G|U|982||||P_1
4WRO|1|1G|A|983||||P_1
4WRO|1|1G|C|984||||P_1
*
4WRO|1|1G|G|1221||||P_1
4WRO|1|1G|G|1222||||P_1
4WRO|1|1G|C|1223||||P_1
4WRO|1|1G|G|1224||||P_1
4WRO|1|1G|A|1225||||P_1
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1L
- Transfer RNA; tRNA
Coloring options: