J3_4WSD_007
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 4WSD|1|13|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4WSD_007 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1952
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4WSD|1|13|C|1116
4WSD|1|13|G|1117
4WSD|1|13|C|1118
*
4WSD|1|13|G|1155
4WSD|1|13|G|1156
4WSD|1|13|A|1157
4WSD|1|13|C|1158
4WSD|1|13|U|1159
4WSD|1|13|G|1160
4WSD|1|13|C|1161
*
4WSD|1|13|G|1175
4WSD|1|13|A|1176
4WSD|1|13|G|1177
4WSD|1|13|G|1178
4WSD|1|13|A|1179
4WSD|1|13|A|1180
4WSD|1|13|G|1181
4WSD|1|13|G|1182
4WSD|1|13|A|1183
4WSD|1|13|G|1184
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1E
- 30S ribosomal protein S2
- Chain 1I
- 30S ribosomal protein S10
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain 8E
- 30S ribosomal protein S9
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