J3_4WSD_009

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4WSD|1|14|G|686, 4WSD|1|14|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSD_009 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0878

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

4WSD|1|14|C|683
4WSD|1|14|G|684
4WSD|1|14|A|685
4WSD|1|14|G|686
4WSD|1|14|C|687
4WSD|1|14|U|688
4WSD|1|14|A|689
*
4WSD|1|14|U|773
4WSD|1|14|A|774
4WSD|1|14|G|775
*
4WSD|1|14|C|791
4WSD|1|14|G|792
4WSD|1|14|A|793
4WSD|1|14|G|794

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34