J3_4WSD_030

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4WSD|1|1H|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSD_030 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0452

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4WSD|1|1H|C|1306
4WSD|1|1H|A|1307
4WSD|1|1H|A|1308
4WSD|1|1H|G|1309
*
4WSD|1|1H|C|1605
4WSD|1|1H|G|1606
4WSD|1|1H|C|1607
4WSD|1|1H|A|1608
4WSD|1|1H|A|1609
4WSD|1|1H|A|1610
4WSD|1|1H|C|1611
*
4WSD|1|1H|G|1620
4WSD|1|1H|U|1621
4WSD|1|1H|G|1622

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain P8

50S ribosomal protein L34