J3_4WSD_056

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGGAG*CUAC*GGAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|1G|U|943
4WSD|1|1G|G|944
4WSD|1|1G|G|945
4WSD|1|1G|A|946
4WSD|1|1G|G|947
*
4WSD|1|1G|C|1234
4WSD|1|1G|U|1235
4WSD|1|1G|A|1236
4WSD|1|1G|C|1237
*
4WSD|1|1G|G|1337
4WSD|1|1G|G|1338
4WSD|1|1G|A|1339
4WSD|1|1G|A|1340

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1B

30S ribosomal protein Thx

Chain 2L

Transfer RNA; tRNA

Chain 3L

Transfer RNA; tRNA

Chain 4A

30S ribosomal protein S13

Chain 82

30S ribosomal protein S9