J3_4WSD_057

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUGACAUGC*GCACAG*CUUACG

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|1G|C|990
4WSD|1|1G|U|991
4WSD|1|1G|U|992
4WSD|1|1G|G|993
4WSD|1|1G|A|994
4WSD|1|1G|C|995
4WSD|1|1G|A|996
4WSD|1|1G|U|997
4WSD|1|1G|G|998
4WSD|1|1G|C|998|||A
*
4WSD|1|1G|G|1042
4WSD|1|1G|C|1043
4WSD|1|1G|A|1044
4WSD|1|1G|C|1045
4WSD|1|1G|A|1046
4WSD|1|1G|G|1047
*
4WSD|1|1G|C|1210
4WSD|1|1G|U|1211
4WSD|1|1G|U|1212
4WSD|1|1G|A|1213
4WSD|1|1G|C|1214
4WSD|1|1G|G|1215

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 22

30S ribosomal protein S3

Chain 5A

30S ribosomal protein S14 type Z