J3_4WSM_013

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4WSM|1|14|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSM_013 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0765

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4WSM|1|14|C|1306
4WSM|1|14|A|1307
4WSM|1|14|A|1308
4WSM|1|14|G|1309
*
4WSM|1|14|C|1605
4WSM|1|14|G|1606
4WSM|1|14|C|1607
4WSM|1|14|A|1608
4WSM|1|14|A|1609
4WSM|1|14|A|1610
4WSM|1|14|C|1611
*
4WSM|1|14|G|1620
4WSM|1|14|U|1621
4WSM|1|14|G|1622

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34