J3_4WSM_054

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WSM_054 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0761

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WSM|1|1G|G|46
4WSM|1|1G|C|47
*
4WSM|1|1G|G|361
4WSM|1|1G|G|362
4WSM|1|1G|A|363
4WSM|1|1G|A|364
4WSM|1|1G|U|365
4WSM|1|1G|C|366
4WSM|1|1G|U|367
*
4WSM|1|1G|A|393
4WSM|1|1G|G|394
4WSM|1|1G|C|395

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3A

30S ribosomal protein S12

Chain 7A

30S ribosomal protein S16