J3_4WT1_029

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_029 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0757

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4WT1|1|1H|C|698
4WT1|1|1H|A|699
4WT1|1|1H|G|700
*
4WT1|1|1H|C|732
4WT1|1|1H|G|733
4WT1|1|1H|A|734
4WT1|1|1H|A|735
4WT1|1|1H|C|736
*
4WT1|1|1H|G|760
4WT1|1|1H|A|761
4WT1|1|1H|U|762
4WT1|1|1H|G|763

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2