J3_4WT1_031

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4WT1|1|1H|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_031 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0534

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4WT1|1|1H|C|1306
4WT1|1|1H|A|1307
4WT1|1|1H|A|1308
4WT1|1|1H|G|1309
*
4WT1|1|1H|C|1605
4WT1|1|1H|G|1606
4WT1|1|1H|C|1607
4WT1|1|1H|A|1608
4WT1|1|1H|A|1609
4WT1|1|1H|A|1610
4WT1|1|1H|C|1611
*
4WT1|1|1H|G|1620
4WT1|1|1H|U|1621
4WT1|1|1H|G|1622

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain P8

50S ribosomal protein L34