J3_4WT1_061

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WT1_061 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1516

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WT1|1|1G|U|1073
4WT1|1|1G|G|1074
*
4WT1|1|1G|U|1083
4WT1|1|1G|G|1084
4WT1|1|1G|U|1085
4WT1|1|1G|U|1086
4WT1|1|1G|G|1087
*
4WT1|1|1G|C|1098
4WT1|1|1G|G|1099
4WT1|1|1G|C|1100
4WT1|1|1G|A|1101
4WT1|1|1G|A|1102

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 42

30S ribosomal protein S5